Network Methods for Describing Sample Relationships in Genomic Datasets: Application to Huntington's Disease


Michael C Oldham1, Peter Langfelder2, Steve Horvath2,3


1Department of Neurology, The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California, San Francisco, USA
2Department of Human Genetics, University of California, Los Angeles, USA
3Department of Biostatistics, University of California, Los Angeles, CA, USA

oldhamm@stemcell.ucsf.edu, shorvath@mednet.ucla.edu

R functions SampleNetworks and ModuleSampleNetworks

Sample Networks are implemented as a function within the freely available R language and environment. Please download and save the relevant R functions: We recommend creating a separate directory (folder) to hold these files.

Tutorial and example data

The tutorial illustrates the use of SampleNetworks on an example data set.



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