Tutorial with embedded R-code
Tutorial document (.doc): contains word version (recommended for MAC--images may not display on a PC). Tutorial document (.pdf): contains pdf version (recommended for PC).Files required for running meta-analysis
Other required files (.zip): format of data explained in code documentsWeighted Gene Co-Expression Network Page
The weighted gene co-expression network analysis method is described in Theory Paper 1: Zhang and Horvath (2005)
For a more mathematical description of weighted gene co-expression networks, see: Dong and Horvath (2007, 2008)
2011-04-14
Reference
This tutorial is a condensed version of the analysis performed in "Miller JA, Horvath S, Geschwind DH. (2010) Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways. Proc Natl Acad Sci U S A. 2010 Jul 13;107(28):12698-703."
Please send your suggestions and comments to: shorvath@mednet.ucla.edu