WGCNA HD Collection for anRichment


Peter Langfelder




Peter (dot) Langfelder (at) gmail (dot) com


Caution: experimental package!

This package should be considered experimental. The "API" (such as it is), i.e., the function names, arguments and returned values, can and probably will change.

WGCNA HD Collection for anRichment

This package contains a collection of gene sets to be used with functions from the package anRichment. This collection contains, as gene sets, the modules determined by Weighted Gene Co-expression Network Analysis (WGCNA) applied to various Huntington's disease (HD)-related data sets. Some analyses are plain WGCNA, some are consensus WGCNA across multiple data sets. Some of the data sets survey expression in human, and some in mouse data, so the collection contains gene sets corresponding to both organisms.

Manual download and installation

Prerequisites

Although the package can be installed under older R versions, we strongly recommend using the newest R version because the annotation packages are continuously updated.

The HuntingtonDiseaseWGCNACollection package requires the package anRichment, and all of its dependecies, to be installed.

R package download and installation

Package HuntingtonDiseaseWGCNACollection, last updated 2014-08-20, is available here as source code and pre-compiled versions for Windows and Mac OSX.

Installation instructions

Short installation instructions, including other required and recommended packages, are available here.

Problems installing or using the package

Please see the list of Frequently Asked Questions (and frequently given answers); the solution to your problem may already be posted there. If you find a bug in the newest version, please email Peter Langfelder.